Fig. 4
From: Haplotype threading: accurate polyploid phasing from long reads
Phasing of potato genome. a Per-base coverage distribution of Illumina and ONT MinION alignments on Chr01. b Fraction of phased variants in relation to gene length. The x-axis shows the gene length and the y-axis the percentage of phased variants in the longest block. Axis histograms and hexagons illustrate the distribution of data points. c IGV [23] screenshot showing alignments of uncorrected (top) and corrected MinION reads (bottom) of FRIGIDA-like protein 5 isoform X2 gene on Chr04. The corrected reads are colored (red, green, blue, purple) according to the haplotypes WHATSHAP POLYPHASE assigned them to. d Multiple sequence alignment of the ORFs detected in the four haplotype sequences. The uppermost gray sequence represents the reference, and the others correspond to the four haplotypes (same order as in panel c)