Table 3 Comparison of results before and after conditional association analysis. PP posterior probability
Scenario | PP ≥0.9 |  |  |  |  |  | PP ≥0.8 |  |  |  |  |  |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Before accounting for LD | Â | Â | After accounting for LD | Â | Â | Before accounting for LD | Â | Â | After accounting for LD | Â | Â |
| Â | True | estFDR | Power | True | estFDR | Power | True | estFDR | Power | True | estFDR | Power |
| Â | FDR (%) | (%) | (%) | FDR (%) | (%) | (%) | FDR (%) | (%) | (%) | FDR (%) | (%) | (%) |
4a | 5.1 | 2.5 | 71.3 | 4.1 | 4.7 | 70.3 | 8.7 | 4.6 | 82.8 | 6.4 | 8.6 | 80.8 |
4b | 3.8 | 2.4 | 67.4 | 2.9 | 5.6 | 65.7 | 7.0 | 4.6 | 79.2 | 4.7 | 10.1 | 75.9 |
4c | 7.6 | 2.7 | 76.4 | 6.9 | 3.4 | 76.3 | 13.6 | 5.0 | 88.5 | 11.8 | 7.0 | 88.0 |