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Table 1 An example HTO matrix. Each row is a GEM with its unique GEM barcode as index. Each column is a HTO sample ID. The ith row and jth column of the matrix store the number of HTO antibodies (in the form of UMI counts) of the jth HTO sample (HTO-j) attached to cells in the ith GEM

From: GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing

GEM barcode

HTO 1

HTO 2

HTO 3

ACTAGGACCA

20

45

723

TCGGACTCGG

561

23

15

GCAGTAGGCA

742

593

14

CCAGACATGA

31

747

39

CCTAGACTTA

21

15

33