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Fig. 2 | Genome Biology

Fig. 2

From: GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing

Fig. 2

Examples of pure-type and phony-type GEMs in scRNA-seq data. a Example compositions of pure-type and phony-type GEMs in a cell-hashing dataset. Note that phony-type GEMs cannot be singlets. b The gating results of a 4-sample cell-hashing CITE-seq PBMC dataset. Notice the unconventional cell types in b (highlighted in red bounding boxes). c The MSM ratio of each cell type in b. The alleged novel cell types in B are all phony-type cells, highlighted by their high MSM ratios

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Genome Biology

ISSN: 1474-760X

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