Table 1 Number of altered peak calls in MPGs, DPGs, and GPGs for the NA12878 H3K4me1 and H3K27ac marks
From: Personalized and graph genomes reveal missing signal in epigenomic data
Version | Mark | Common | Personal-only | Ref-only |
|---|---|---|---|---|
MPG, paternal | H3K4me1 | 146,520 | 1636 (1.1%) | 854 (0.6%) |
MPG, maternal | H3K4me1 | 146,570 | 1622 (1.1%) | 808 (0.6%) |
MPG, downsampled | H3K4me1 | 146,688 | 1051 (0.7%) | 550 (0.4%) |
DPG, Hap1 | H3K4me1 | 141,444 | 7176 (4.8%) | 6755 (4.6%) |
DPG, Hap2 | H3K4me1 | 141,442 | 7130 (4.8%) | 6774 (4.6%) |
DPG, Pendleton | H3K4me1 | 142,347 | 16,245 (10.2%) | 8912 (5.8%) |
GPG | H3K4me1 | 132,668 | 3068 (2.3%) | 1178 (0.9%) |
MPG, paternal | H3K27ac | 68,888 | 660 (1.0%) | 351 (0.5%) |
MPG, maternal | H3K27ac | 68,909 | 688 (1.0%) | 335 (0.5%) |
MPG, downsampled | H3K27ac | 68,953 | 438 (0.6%) | 218 (0.3%) |
DPG, Hap1 | H3K27ac | 63,419 | 2078 (3.2%) | 9901 (13.5%) |
DPG, Hap2 | H3K27ac | 63,441 | 2091 (3.2%) | 9899 (13.5%) |
DPG, Pendleton | H3K27ac | 66,811 | 5208 (7.2%) | 4980 (6.9%) |
GPG | H3K27ac | 75,538 | 1847 (2.4%) | 1206 (1.6%) |