From: Benchmarking of computational error-correction methods for next-generation sequencing data
Software tool | Version | Underlying algorithm | Published year | Programming language | Default k-mer size |
---|---|---|---|---|---|
Coral | 1.4.1 | Multiple Sequence Alignment (MSA) | 2011 | C | N/A |
SGA | 0.10.15 | FM-index search | 2012 | C++ | 31 |
Musket | 1.1 | k-mer spectrum | 2012 | C++ | N/A |
Racer | 1.0.1 | k-mer spectrum | 2013 | C++ | N/A |
Bless | 1.02 | k-mer spectrum | 2014 | C++ | N/A |
Lighter | 1.1.1 | k-mer spectrum | 2014 | C++ | N/A |
Fiona | 0.2.8 | k-mer spectrum | 2014 | C++ | N/A |
BFC | 1 | k-mer spectrum | 2015 | C | N/A |
Pollux | 1.0.2 | k-mer spectrum | 2015 | C | 31 |
RECKONER | 0.2.1 | k-mer spectrum | 2017 | C++ | N/A |