Table 4 Comparison of different assemblies of barley cv. Morex
From: TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
| Â | BAC-by-BAC | TRITEX | TRITEX | |
|---|---|---|---|---|
Morex V1 [3] | Dovetail | Morex V2 | MP9 only | |
Scaffold assembly size | 4.79 Gb | 4.65 Gb | 4.6 Gb | |
Scaffold N50 | 79 kb | 3.4 Mb | 2.6 Mb | |
Scaffold N90 | 4.4 kb | 287 kb | 150 kb | |
Assembled sequence in scaffolds ≥ 1 kb | 4.67 Gb | 4.34 Gb | 4.32 Gb | |
Assembled sequence in scaffolds ≥ 1 Mb | 0 bp | 3.80 Gb | 3.49 Gb | |
Unfilled internal gaps | 216 Mb (4.5%) | 116 Mb (2.5%) | 106 Mb (2.3%) | |
Super-scaffold N50 | 1.9 Mb | 1.3 Mb | 40.2 Mb | 32.6 Mb |
Super-scaffold N90 | 336 kb | 7.5 kb | 2.0 Mb | 1.2 Mb |
Size of pseudomolecules | 4.58 Gb |  | 4.26 Gb | 4.20 Gb |
Size of unanchored sequences (chrUn) | 246 Mb |  | 83 Mb2 | 111 Mb2 |
Proportion of complete full-length cDNAs1 | 81.8% | 84.1% | 89.8% | 90.4% |