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Table 1 Single cell RNA-Seq datasets used

From: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model

NumberAuthorTissueCellsMTUNotes
1Zheng [5]ERCC101511,125Spike-in only; technical negative control
2Zheng [5]Monocytes26127821 cell type; biological negative control
3Tung [32]iPSCs5724,1701 cell type; biological negative control
4Duo [15]PBMCs399412154 equal clusters of FACS-purified cells
5Duo [15]PBMCs399412988 equal clusters of FACS-purified cells
6Haber [33]Intestine5333755Authors computationally identified 12 types
7Muraro [34]Pancreas228218,795Authors computationally identified 9 types
8Zheng [5]PBMCs68,5791292Benchmarking computational speed
  1. Species: all H. sapiens except Haber (M. musculus). Protocols: all 10 × except Muraro (CEL-Seq2) and Tung (SMARTer). MTU median total UMI count. iPSCs induced pluripotent stem cells