Table 1 Single cell RNA-Seq datasets used
From: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model
Number | Author | Tissue | Cells | MTU | Notes |
|---|---|---|---|---|---|
1 | Zheng [5] | ERCC | 1015 | 11,125 | Spike-in only; technical negative control |
2 | Zheng [5] | Monocytes | 2612 | 782 | 1 cell type; biological negative control |
3 | Tung [32] | iPSCs | 57 | 24,170 | 1 cell type; biological negative control |
4 | Duo [15] | PBMCs | 3994 | 1215 | 4 equal clusters of FACS-purified cells |
5 | Duo [15] | PBMCs | 3994 | 1298 | 8 equal clusters of FACS-purified cells |
6 | Haber [33] | Intestine | 533 | 3755 | Authors computationally identified 12 types |
7 | Muraro [34] | Pancreas | 2282 | 18,795 | Authors computationally identified 9 types |
8 | Zheng [5] | PBMCs | 68,579 | 1292 | Benchmarking computational speed |