Table 1 Summary statistics of the reference tomato genome as well as the three novel accessions. Chromosome span indicates the total span of all of the chromosomes, including gaps. Chromosome N50 is the length such that half of the total span is covered in chromosome sequences this length or longer. Chr0 bases report the number of bases assigned to the unresolved chromosome 0. Contig span is the total length of non-gap (N) characters. Contig N50 is the length such that half of the contig span is covered by contigs this length or longer. Number SVs reports the number of SVs reported by RaGOO using the integrated version of Assemblytics
From: RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Accession | Chromosome span (bp) | Chromosome N50 (bp) | Chr0 bases (bp) | Number Contigs | Contig span (bp) | Contig N50 (bp) | Number SVs |
|---|---|---|---|---|---|---|---|
Heinz | 828,076,956 | 66,723,567 | 20,852,292 | 22,705 | 746,357,581 | 133,084 | NA |
M82 | 792,934,937 | 67,021,692 | 8,891,603 | 2910 | 771,143,786 | 1,458,445 | 36,191 |
BGV | 794,568,563 | 67,174,401 | 4,643,553 | 638 | 769,694,915 | 4,105,177 | 45,927 |
FLA | 796,004,315 | 67,650,907 | 5,490,904 | 2577 | 750,743,510 | 795,751 | 45,478 |