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Table 1 Wall time and memory use for individual methods applied to the simulated dataset

From: MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations

 

Wall time (min)

MaxRSS (GB)

Reference-based

14

0.2

MicroPro (Megahit)

81

12

MicroPro (Minia 3)

43

6

De novo assembly-based (Megahit)

305

20

De novo assembly-based (Minia 3)

79

9

  1. Computing resources required for the individual methods used in the simulation study are provided. MaxRSS refers to maximum memory used by the corresponding method
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Genome Biology

ISSN: 1474-760X

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