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Table 1 Glossina species contig and scaffold assembly statistics

From: Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes

Scaffold length Glossina morsitans Glossina pallidipes Glossina austeni Glossina fuscipes Glossina palpalis Glossina brevipalpis
Total genomic coverage 100× 46× 50× 52× 58× 45×
Genome size (Mb) 366 357 370 374 380 315
 > 1 Mb 13 102 78 70 63 81
 250 kb–1 Mb 138 248 316 393 395 202
 100–250 kb 605 184 248 330 326 136
 10–100 kb 3663 290 379 496 709 257
 5–10 kb 737 106 94 165 507 85
 2–5 kb 1933 255 206 252 978 156
 < 2 kb 6718 541 884 689 948 734
Total no. of contigs 24,071 7275 18,748 13,688 31,320 16,993
N50 contig length (kb) 49 167 46 64 24 62
Total no. of Scaffolds 13,807 1726 2205 2395 3926 1651
GC content (%) 33 35 34 34 34 27
N50 scaffold length (kb) 120 1038 812 561 575 1209
L50 (rank of N50 scaffold) 569 94 115 178 186 62
Repeat content (%) 34.95 35.49 38.64 37.09 35.49 37.67
  1. N50 is defined as the minimum contig length needed to cover 50% of the genome. L50 is defined as the smallest number of contigs whose length sum makes up half of genome size