Fig. 7
From: scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data
scAlign is robust to distinct cell type sets between conditions. a Scatterplot matrix of performance of each method when both conditions have the same number of cell types (y-axis), compared to when one cell type has been removed (the LPS condition of the Mann benchmark, or the old mouse condition of the Kowalczyk benchmark) (x-axis). Each point is scaled in size by the silhouette coefficient for the clustering after alignment. b tSNE plots with cells colored by cell type and condition for the top performing methods