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Fig. 3 | Genome Biology

Fig. 3

From: BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes

Fig. 3

Removing batch effects in scRNA-seq data of pancreas cells. a UMAP visualizations of batch effect removal results for Experiment all on pancreas dataset. Identified alpha and beta cell subpopulations in the Baron batch are highlighted with dashed circles. b Expression patterns of differently expressed genes within alpha and beta cells colored by log-transformed TPM values. Statistical significance of differential expression analysis is listed in Additional file 1: Table S1-S2

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Genome Biology

ISSN: 1474-760X

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