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Table 1 List of targeted genes in transcriptomics experiments

From: BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Panel Number of targets List of targets
Pluripotency 15 Housekeeping: B2M, GAPDH; pluripotency: NANOG, POU5F1/OCT4, SOX2, LIN28A, DNMT3B, ZFP42/REX1; cell cycle: CCND1, CCNE1; control: CER1, 4 RNA spike-ins
Differentiation (Wnt/β-catenin) 22 Lateral mesoderm: EOMES, HAND1, MESP1; paraxial/(pre-)somitic mesoderm: CDX2, HOXA1, MSGN1, PAX3, TBX6; neural crest: ZIC1, MSX1; pan-primitive streak: EVX1, GSC, MIXL1, T; anterior primitive streak: NODAL; endoderm: FOXA2, SOX17; control: GAPDH, NANOG, 3 RNA spike-ins