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Table 2 Overview of putative mES enhancers found within CHi-C interactions called by different methods

From: ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

 

Putative mES enhancers in called interaction set

Total called interactions/interactions with putative enhancers

ChiCMaxima

16.8% (3235)

7.3

CHiCAGO

19.2% (3680)

25.6

GOTHiC

71.4% (13711)

40.0

ChiCMaxima + CHiCAGO

4.8% (930)

6.0