ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Table 1 Overview of CHi-C interactions called by CHiCAGO, GOTHiC, and CHiCMaxima

	CHiCAGO [20]	GOTHiC [11]	ChiCMaxima (this manuscript)	ChiCMaxima and CHiCAGO
Number of called interactions	94,148	548,551	23,583	5611
Mean number of called interactions per bait	4.2	29.4	1.4	0.34

ISSN: 1474-760X