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Table 1 Overview of CHi-C interactions called by CHiCAGO, GOTHiC, and CHiCMaxima

From: ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

  CHiCAGO [20] GOTHiC [11] ChiCMaxima (this manuscript) ChiCMaxima and CHiCAGO
Number of called interactions 94,148 548,551 23,583 5611
Mean number of called interactions per bait 4.2 29.4 1.4 0.34
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Genome Biology

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