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Table 3 Candidate orthologous groups (OGs) with CAFE overall p values < 0.01 for which a model favoring selection for larger sizes in Polyphaga showed a greater likelihood. OG identifiers for functional category cytochrome P450s (P450), carboxylesterases (CE), glutathione S-transferases (GST), and cysteine proteases (CYS) are from OrthoDB v8 (ODB8 ID). Akaike Information Criterion corrected for small sample size (AICc) values are reported for all tested models. BM1 (Brownian motion with a single rate for the whole tree), BMS (Brownian motion with different rates for each regime), OU1 (selection towards the same optimum for both regimes) all represent the null hypothesis. OUM (selection towards two optima, same variance) and OUMV (selection towards two optima, two variances) represent the alternative hypotheses. The mean values in each suborder (Adephaga vs. Polyphaga) are presented in the last two columns. Values in italics indicate the preferred (maximum likelihood) model. A delta AICc > 2 is required for H1 to be retained

From: Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles

Category

ODB8 ID

BM1 AICc H0.1

BMS AICc H0.2

OU1 AICc H0.3

OUM AICc H1.1

OUMV AICc H1.2

Mean Adephaga

Mean Polyphaga

P450

EOG805VG7

148.37

153.21

143.35

148.10

137.95

34.13

34.47

CE

EOG87DCWX

143.23

143.77

143.63

138.91

141.15

6.55

18.78

CE

EOG8KD911

87.08

91.23

82.90

89.10

79.74

0.89

2.86

CE

EOG876NDC

80.64

85.67

80.08

87.42

77.23

1.72

3.48

GST

EOG87WR3Z

86.24

87.76

76.05

74.40

72.12

1.71

3.16

GST

EOG81RS7Z

108.77

114.44

109.19

113.76

103.79

6.85

11.69

GST

EOG85F05D

117.62

115.88

111.53

107.62

106.32

5.69

9.16

CYS

EOG8JDKNM

91.85

91.62

89.74

85.66

88.25

1.80

3.78