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Table 1 Samples and sequencing statistics

From: Whole-genome sequence analysis of a Pan African set of samples reveals archaic gene flow from an extinct basal population of modern humans into sub-Saharan populations

Individual identifier1 Mitochondrial haplogroup chrY haplogroup Coverage #SNPs #Heterozygous
JuhoansiSan_HGDP01029 L0d1b1 A1b1a1a1 46.63 3,169,565 1,968,088
JuhoansiSan_HGDP01036 L0d1c1a A1b1b2a 41.34 3,164,150 1,947,901
KhomaniSan_A403 * L0d2a1 A1b1b2a 23.77 3,142,132 1,877,045
TuuSan_KB1 L0d1b2 B2b1b 25.87 3,157,740 1,961,736
MbutiPygmy_HGDP00456 L0a2b E1b1a1a1c1a1c 31.25 3,081,528 1,897,510
MbutiPygmy_HGDP00982 L0a2b E2b1a1 40.13 3,089,676 1,930,933
BakaPygmy_A405 * L1c1a2b E1b1a1a1c1a1c 32.38 3,083,814 1,986,951
SouthAfricanBantu_A402 * L2a1f E1b1a1a1d1c 22.72 3,001,336 1,972,901
WestAfricanBantu_A404 * L3d3a1 E1b1a1a1c1a1c 32.53 2,982,337 1,957,325
Yoruba_HGDP00927 L1b1a E1b1a1a1c1a1 41.93 2,915,392 1,883,193
Yoruba_HGDP00936 L2a12b E1b1a1a1c1a1 42.78 2,941,205 1,920,680
Yoruba_NA18507 L1b1a3 E1b1a1a1c1a1 43.62 2,934,201 1,912,252
Mandenka_HGDP01284 L2c3a E1a1 33.39 2,934,343 1,914,085
Mandenka_HGDP01286 L1b1a E1b1b1a1a1 40.07 2,927,830 1,911,253
Laal_A409 * L3e1c B1 25.11 2,916,350 1,899,437
Dinka_DNK02 L2c1 E2a 36.81 2,880,056 1,856,506
Dinka_DNK07 L0a1a A1b1b2b 46.81 2,880,930 1,844,312
EastAfricanBantu_A401 * L2a1h E1b1a1a1c1a1c 21.01 2,893,697 1,917,226
Toubou_A408 * M1 T1a1 24.79 2,755,888 1,756,695
Saharawi_A406 * L3b1b1 E1b1b1b1a 24.27 2,525,396 1,545,877
Libyan_A407 * L2a1c E1b1b1b1a 25.02 2,540,250 1,609,582
French_HGDP00521 T1a I1a 35.14 2,398,449 1,434,940
Sardinian_HGDP00665 H3u I2a1a1 32.55 2,396,919 1,429,346
Han_HGDP00778 A5b1b O3a2c1a 35.65 2,418,780 1,361,654
Dai_HGDP01307 B4a1c4 O2 35.42 2,406,526 1,362,632
  1. 1Samples newly sequenced in this study are marked with an *