Table 4 Average Spearman correlation of gene-level estimates from each method for the single-cell datasets against bulk data from the same cell types (four for human, three for mouse)
From: Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
Dataset | Alevin | Cell Ranger | Naïve | DropEst |
|---|---|---|---|---|
Human PBMC 4k | 0.813 | 0.78 | 0.747 | 0.783 |
Human PBMC 8k | 0.81 | 0.772 | 0.74 | 0.776 |
Mouse neurons 900 | 0.812 | 0.773 | 0.761 | 0.779 |
Mouse neurons 2k | 0.822 | 0.781 | 0.767 | 0.784 |
Mouse neurons 9k | 0.831 | 0.796 | 0.776 | 0.803 |