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Table 1 Rarefaction analysis results for the core and accessory genomes of each phylogroup from the P. syringae species complex

From: Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex

Phylogroup Groupa Strains Hard-core genomeb Soft-core genomec Hard pan-genomed Soft pan-genomee Heap’s law (alpha)
All strains NA 391 124 2410 77,728 30,622 0.4251
Primary phylogroups NA 380 147 2472 70,210 29,378 0.4429
Secondary phylogroups NA 11 2067 2067 14,539 6458 0.3008
Phylogroup 1 1 111 906 3070 33,367 15,248 0.4334
Phylogroup 2 1 67 1482 3017 21,773 11,826 0.4527
Phylogroup 3 1 143 895 2753 27,932 16,406 0.5268
Phylogroup 4 1 30 2389 3061 13,038 7896 0.5687
Phylogroup 5 1 15 2058 2058 12,655 7711 0.6932
Phylogroup 6 1 11 3015 3015 9531 6444 0.7560
Phylogroup 7 2 4 3334 3334 6956 4800 0.8797
Phylogroup 9 2 2 4281 4281 6078 4281 NA
Phylogroup 10 1 3 4040 4040 6307 4543 0.6202
Phylogroup 11 2 3 3290 3290 6806 4117 0.6877
Phylogroup 13 2 2 3760 3760 6915 3760 NA
  1. NA not applicable
  2. aPrimary (1) or secondary (2) phylogroup
  3. bOrthology families present in all strains
  4. cOrthology families present in ≥ 95% of strains
  5. dAll orthology families
  6. eOrthology families found in > 1 strain (non-singletons)