Table 1 Rarefaction analysis results for the core and accessory genomes of each phylogroup from the P. syringae species complex
Phylogroup | Groupa | Strains | Hard-core genomeb | Soft-core genomec | Hard pan-genomed | Soft pan-genomee | Heap’s law (alpha) |
|---|---|---|---|---|---|---|---|
All strains | NA | 391 | 124 | 2410 | 77,728 | 30,622 | 0.4251 |
Primary phylogroups | NA | 380 | 147 | 2472 | 70,210 | 29,378 | 0.4429 |
Secondary phylogroups | NA | 11 | 2067 | 2067 | 14,539 | 6458 | 0.3008 |
Phylogroup 1 | 1 | 111 | 906 | 3070 | 33,367 | 15,248 | 0.4334 |
Phylogroup 2 | 1 | 67 | 1482 | 3017 | 21,773 | 11,826 | 0.4527 |
Phylogroup 3 | 1 | 143 | 895 | 2753 | 27,932 | 16,406 | 0.5268 |
Phylogroup 4 | 1 | 30 | 2389 | 3061 | 13,038 | 7896 | 0.5687 |
Phylogroup 5 | 1 | 15 | 2058 | 2058 | 12,655 | 7711 | 0.6932 |
Phylogroup 6 | 1 | 11 | 3015 | 3015 | 9531 | 6444 | 0.7560 |
Phylogroup 7 | 2 | 4 | 3334 | 3334 | 6956 | 4800 | 0.8797 |
Phylogroup 9 | 2 | 2 | 4281 | 4281 | 6078 | 4281 | NA |
Phylogroup 10 | 1 | 3 | 4040 | 4040 | 6307 | 4543 | 0.6202 |
Phylogroup 11 | 2 | 3 | 3290 | 3290 | 6806 | 4117 | 0.6877 |
Phylogroup 13 | 2 | 2 | 3760 | 3760 | 6915 | 3760 | NA |