Fig. 3

Output rates and alignment rates of ten methods on PacBio datasets using five SR coverages. The comparisons were performed on a the small datasets (i.e., E. coli and S. cerevisae) and b the large datasets (i.e., D. melanogaster and A. thaliana). The tests that failed to complete are not shown. The circle diameter is positively correlated to the output rate, with the scale on the right side ranging from 0.20 to 100.00%. The dashed circles represent 100.00% output rates. The numbers labeled in circles represent the corresponding alignment rates that are also scaled with rainbow colors. The output rates of raw reads are 100.00% and the corresponding alignment rates are also shown for comparison