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Fig. 4 | Genome Biology

Fig. 4

From: Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate

Fig. 4

Capture-4Tran identifies pairwise interactions from TEs a Scheme of probe design for Capture 4Tran. Blue lines represent the location of the restriction enzyme site. Biotinylated oligonucleotides are shown with a letter B. This procedure generates reads associated with the TE of interest, the genomic region adjacent to the TE, and an interaction involving the TE. b Table representing number of annotated, predicted and observed MER41 LTR elements. The 3 MER41 subfamilies that our MER41 oligonucleotide binds to is shown. Percentages relate to the total number of annotated MER41 elements in HeLa cells. c Hi-C and Capture-4Tran using the MER41 probe. Boxes in the top panels show zoomed in views from the bottom panels. Data from two replicates was combined for visualization

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Genome Biology

ISSN: 1474-760X

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