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Table 3 Genes and transcripts in CHESS (v2.1) that are also found in either RefSeq (rel 108) or GENCODE (v27) (columns 2 and 5) and that are unique to CHESS (columns 3 and 6)

From: CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

Gene biotype Genes Transcripts
Shared by RefSeq or GENCODE Novel in CHESS Novel + FANTOM Shared by RefSeq or GENCODE Novel in CHESS Novel + FANTOM
Protein coding 20,128 224 26 169,959 96,372 23,102
LncRNA 16,216 2671 1407 34,222 15,670 5840
Antisense 598 1546 494 637 2051 606
MiscRNA 1227 1 1 2284 2063 476
  1. The columns labeled “Novel + FANTOM” show the subset of CHESS genes and transcripts that are not found in RefSeq or GENCODE but that are present in the FANTOM gene catalog