Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders

Table 1 Fetal brain eGenes located at a common inversion polymorphism on chromosome 17q21

eGene	ENSEMBL ID	Number eQTL SNPs FDR < 0.05	Top eQTL	Top eQTL FDR	r² with inversion*	H1/H2 expression ratio
NSF	ENSG00000073969	40	rs3874943	4.05E−06	0.14	1.02
KANSL1	ENSG00000120071	2226	rs2668690	2.81E−14	0.94	0.89
LRRC37A	ENSG00000176681	2225	rs3785884	5.89E−17	0.97	0.80
ARL17A	ENSG00000185829	34	rs1863115	7.03E−04	0.11	1.00
KANSL1-AS1	ENSG00000214401	2215	rs62057151	1.72E−11	0.94	0.81
LRRC37A4P	ENSG00000214425	2210	rs55944735	7.40E−12	0.97	1.96
ARL17B	ENSG00000228696	48	rs1863115	1.82E−06	0.11	1.02
LRRC37A2	ENSG00000238083	2213	rs753236	7.11E−15	0.94	0.83
NSFP1	ENSG00000260075	54	rs1863115	2.89E−14	0.11	1.22
AC005670.2	ENSG00000262633	1036	rs2696689	4.02E−03	0.65	0.91
MAPK8IP1P2	ENSG00000263503	2276	rs111447859	1.50E−23	0.97	0.39
DND1P1	ENSG00000264070	2199	17:44219831	1.73E−08	0.97	1.38
MAPT-AS1	ENSG00000264589	1816	rs60814418	3.01E−02	0.61	1.15
RN7SL199P	ENSG00000265315	2203	rs56180212	2.47E−09	0.97	0.78
RN7SL656P	ENSG00000265411	2204	rs56180212	2.17E−09	0.97	0.78
AC138645.1	ENSG00000266497	2218	rs4327090	5.75E−11	0.94	0.82
AC091132.3	ENSG00000266504	2213	rs4327090	5.12E−11	0.94	0.82
AC091132.4	ENSG00000266918	2066	rs9899833	1.55E−02	0.54	1.06
AC091132.5	ENSG00000267198	39	rs79475968	7.94E−05	0.04	1.03
AC091132.6	ENSG00000267246	2253	rs753236	7.61E−11	0.94	0.76
Metazoa_SRP	ENSG00000278770	2215	rs4327090	2.30E−09	0.94	1.54

*Consistent with Stefansson et al [22], inversion status was inferred through genotype at SNP rs1800547, with the MAPT haplotype “H2” used to denote the inversion and “H1” the non-inverted form

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