Table 2 List of splicing genes undergoing differential pre-mRNA processing with quiescence
From: Alternative polyadenylation factors link cell cycle to migration
Type of pre-mRNA processing (analysis) | Splicing genes |
|---|---|
Differential exon use (DEXSeq) | KDM1A, LUC7L, AQR, ZCCHC8, SFSWAP, U2AF2, SUGP2, SNRPA, YTHDC1, FUS, PAPOLA, HNRNPC, HNRNPH3, HNRNPM, POLR2E, SNU13, RBFOX2, SRSF5, ACIN1, PABPC1L, USB1, SNRNP70, RBM28, LSM5, CASC3, LUC7L3, DHX15, MAGOHB, SRSF9, SRSF3, PAPOLG, SF3B1, SRSF7, SRSF4, SFPQ, SRSF11, RBM25, DDX39A, SRSF6, RBM39, SNRPA1, ZRANB2, SRRM1, RBM17, CCNH, RBMX2, TRA2B, HNRNPD, SCAF11, SNRPG, SNRNP200, SREK1, RNF20, CCAR2, U2AF1, CHTOP, ZNF326, TRA2A, CDK12, SF1, HNRNPH1, RBM4B, RSRC1, GEMIN4, NPM1, SF3A3, PRPF39, ADARB1, UBL5 |
Alternative splicing (rMATS) | LUC7L, ZCCHC8, SRRT, HNRNPC, HNRNPH3, NHP2L1, DDX17, RBM23, PRMT5, SRSF5, ACIN1, PQBP1, SNRNP70, POLR2I, DDX5, MAGOHB, SRSF3, PRPF4B, SF3B1, SRSF7, TIA1, SRSF11, RBM25, DDX39A, SRSF6, SNRPB, DNAJC8, RBM39, SNRPA1, SRRM1, PNPT1, HNRNPD, SCAF11, MBNL1, SREK1, AFF2, RBPMS, U2AF1, CHTOP, SRSF2, TRA2A, HNRNPH1, PRPF39, UBL5, DDX39B |
UTR-type alternative polyadenylation for 2pA site-containing genes | WDR77, SNRNP40, SF3A3, CHTOP, TSEN15, KHDRBS1, RBM17, HNRNPH3, CSTF3, RBM4B, MAGOHB, SART3, CMTR2, TXNL4B, POLR2C, SF3B3, SRSF2, RNMT, GTF2F1, KHSRP, HNRNPUL1, PTBP1, CIR1, TIA1, GCFC2, APP, RBFOX2, NHP2L1, POLDIP3, ISY1, NCBP2, RSRC1, POLR2H, PAPD4 |
Upstream region-type alternative polyadenylation for 2 pA site-containing genes | HNRNPR, WBP11, RBBP6, SAFB2, PRPF4B, PSIP1, ZRSR2 |