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Table 2 List of splicing genes undergoing differential pre-mRNA processing with quiescence

From: Alternative polyadenylation factors link cell cycle to migration

Type of pre-mRNA processing (analysis) Splicing genes
Differential exon use (DEXSeq) KDM1A, LUC7L, AQR, ZCCHC8, SFSWAP, U2AF2, SUGP2, SNRPA, YTHDC1, FUS, PAPOLA, HNRNPC, HNRNPH3, HNRNPM, POLR2E, SNU13, RBFOX2, SRSF5, ACIN1, PABPC1L, USB1, SNRNP70, RBM28, LSM5, CASC3, LUC7L3, DHX15, MAGOHB, SRSF9, SRSF3, PAPOLG, SF3B1, SRSF7, SRSF4, SFPQ, SRSF11, RBM25, DDX39A, SRSF6, RBM39, SNRPA1, ZRANB2, SRRM1, RBM17, CCNH, RBMX2, TRA2B, HNRNPD, SCAF11, SNRPG, SNRNP200, SREK1, RNF20, CCAR2, U2AF1, CHTOP, ZNF326, TRA2A, CDK12, SF1, HNRNPH1, RBM4B, RSRC1, GEMIN4, NPM1, SF3A3, PRPF39, ADARB1, UBL5
Alternative splicing (rMATS) LUC7L, ZCCHC8, SRRT, HNRNPC, HNRNPH3, NHP2L1, DDX17, RBM23, PRMT5, SRSF5, ACIN1, PQBP1, SNRNP70, POLR2I, DDX5, MAGOHB, SRSF3, PRPF4B, SF3B1, SRSF7, TIA1, SRSF11, RBM25, DDX39A, SRSF6, SNRPB, DNAJC8, RBM39, SNRPA1, SRRM1, PNPT1, HNRNPD, SCAF11, MBNL1, SREK1, AFF2, RBPMS, U2AF1, CHTOP, SRSF2, TRA2A, HNRNPH1, PRPF39, UBL5, DDX39B
UTR-type alternative polyadenylation for 2pA site-containing genes WDR77, SNRNP40, SF3A3, CHTOP, TSEN15, KHDRBS1, RBM17, HNRNPH3, CSTF3, RBM4B, MAGOHB, SART3, CMTR2, TXNL4B, POLR2C, SF3B3, SRSF2, RNMT, GTF2F1, KHSRP, HNRNPUL1, PTBP1, CIR1, TIA1, GCFC2, APP, RBFOX2, NHP2L1, POLDIP3, ISY1, NCBP2, RSRC1, POLR2H, PAPD4
Upstream region-type alternative polyadenylation for 2 pA site-containing genes HNRNPR, WBP11, RBBP6, SAFB2, PRPF4B, PSIP1, ZRSR2