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Table 1 IWGSC open access data summary hosted in the IWGSC data repository of the Wheat@URGI portal in July 2018

From: Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Data Details Tools Contacts
IWGSC RefSeq v1.0 assembly Scaffolds, super scaffolds, pseudomolecules Download, BLAST, browser, and InterMine IWGSC
IWGSC RefSeq v1.0 annotation Genes, transposable elements, non-coding RNAs, markers, functional annotation, varietal SNPs, GBS maps, optical maps, Radiation Hybrid maps Download, browser, and InterMine IWGSC
IWGSC RefSeq v1.1 annotation Genes, RNA-Seq mapping Download, browser, and InterMine IWGSC
IWGSC WGA v0.4 assembly Scaffolds, superscaffolds, pseudomolecules Download and BLAST IWGSC
IWGSC Survey sequence v2 assembly and annotation Contigs, gene models, markers, Genome Zipper, POPSEQ Download, BLAST, and browser IWGSC, Mihaela Martis, Manuel Spannagl, Klaus Mayer, Nils Stein, Curtis Pozniak, Eduard Akhunov
IWGSC Survey sequence v3 assembly and annotation Scaffolds, gene models Download, BLAST, and browser Andy Sharpe, David Konkin, Curtis Pozniak
3B reference sequence assembly and annotation Contig, scaffolds, pseudomolecule, genes, transposable elements, RNAs, markers Download, BLAST, and browser Frédéric Choulet, Etienne Paux
Other wheat species WGS assemblies Triticum durum cv. Cappelli, Triticum durum cv. Strongfield, Triticum monococcum, Aegilops speltoides, Aegilops sharonensis, Triticum urartu, Aegilops tauschii Download and BLAST Jon Wright, Mario Caccamo
Expression Deep transcriptome sequencing Download Lise Pingault, Etienne Paux
Triticum urartu and Triticum turgidum (GrainGenes) Download Jorge Dubcovsky
Variations Varietal SNPs Download and browser Jorge Dubcovsky, Eduard Akhunov
IWGSC SNPs Download Etienne Paux
GBS and Whole Exome Capture Download Eduard Akhunov
Physical maps 1AS v1 and v2 Download and browser James Breen, Thomas Wicker, Beat Keller
1AL v1 and v2 Download and browser Stuart Lucas, Hikmet Budak
2AS Download and browser Kuldeep Singh
2AL Download and browser Kuldeep Singh
3AS v1 Download and browser Sunish Sehgal, Bikram Gill
3AS v2 Download and browser Sunish Sehgal, Bikram Gill
3AL Download and browser Vijay Kumar Tiwari
4AS Download and browser Miroslav Valarik, Jaroslav Dolezel
4AL v1 and v2 Download and browser Miroslav Valarik, Jaroslav Dolezel
5AS Download and browser Simone Scalabrin
5AL Download and browser Simone Scalabrin
6AS Download and browser Naser Poursarebani
6AL Download and browser Naser Poursarebani
7AS Download and browser Gabriel Keeble-Gagnere
7AL Download and browser Gabriel Keeble-Gagnere
1BS v1, v2, v3, and v5 Download and browser Dina Raats, Zeev Frenkel, Abraham Korol
1BL v1 and v2 Download and browser Etienne Paux
2BS Download and browser John Jacobs
2BL Download and browser John Jacobs
3B Download and browser Etienne Paux
4BS Download and browser John Jacobs
4BL Download and browser John Jacobs
5BS Download and browser Elena Salina
5BL Download and browser John Jacobs
6BS v1 and v2 Download and browser Fuminori Kobayashi, Hirokazu Handa
6BL v1 and v2 Download and browser Fuminori Kobayashi, Hirokazu Handa
7BS Download and browser Tatiana Belova, Odd-Arne Olsen
7BL Download and browser Tatiana Belova, Odd-Arne Olsen
1D Download and browser Bikram Gill, Sunish Sehgal, Vijay Kumar Tiwari
2DS Download and browser John Jacobs
2DL Download and browser John Jacobs
3DS v1 and v2 Download and browser Jan Bartos, Jaroslav Dolezel
3DL Download and browser Jon Wright, Mario Caccamo, Mike Bevan
4D Download and browser Bikram Gill, Sunish Sehgal, Vijay Kumar Tiwari
5DS Download and browser Hikmet Budak, Bala Ani Akpinar
5DL Download and browser John Jacobs
6D Download and browser Bikram Gill, Sunish Sehgal, Vijay Kumar Tiwari
7DS Download and browser Hana Simkova, Jaroslav Dolezel
7DL Download and browser Song Weining, Wang Le
  1. Enquiries about these data should be addressed to communications@wheatgenome.org and urgi-contact@inra.fr