Impact of transposable elements on genome structure and evolution in bread wheat

Table 2 TE subfamilies that show differences in abundance between subgenomes

CLARITE name	TREP name^a	A/B^b	A/D^c	B/D^d	Comment	Genome^e
DTC_famc14	DTC_Pavel	1.9	0.4	0.2	Enriched	D
DTC_famc8	DTC_TAT4	0.8	0.3	0.4	Enriched	D
RLC_famc1.7	RLC_Angela_A	3.9	1.0	0.2	Depleted	B
RLC_famc1.8	RLC_Angela_B	0.2	0.6	2.9	Enriched	B
RLC_famc3.2	RLC_Claudia	1.9	4.1	2.2	Enriched	A
RLG_famc1.2	RLG_Fatima_E	0.8	3.8	4.7	Enriched	A
RLG_famc1.4	RLG_Fatima_C	0.2	3.9	20.9	Enriched	B
RLG_famc1.5	RLG_Fatima_B	2.5	76.6	30.1	Enriched	A
RLG_famc10.2	RLG_Carmilla	1.5	9.6	6.6	Enriched	B
RLG_famc10.3	RLG_Ifis	0.9	0.2	0.3	Enriched	D
RLG_famc15	RLG_Jeli	1.0	3.3	3.4	Depleted	D
RLG_famc3.1	RLG_Laura_B	1.0	4.8	5.0	Depleted	D
RLG_famc3.4	RLG_Laura_A	1.0	5.3	5.3	Depleted	D
RLG_famc7.2	RLG_Erika	4.9	2.0	0.4	Enriched	A
RLG_famc7.3	RLG_Sumaya	2.9	4.1	1.4	Enriched	A
RLG_famc7.4	RLG_Sumana	0.2	0.9	4.1	Enriched	B
RLG_famc9.2	RLG_Daniela	0.6	7.1	11.0	Enriched	B
RLX_famc4	Unnamed	0.5	0.2	0.5	Enriched	D

^aName under which the family was previously described and/or stored in the TREP database
^bcdRatio of abundance between subgenomes
^eSubgenome in which abundance or distribution of the respective TE families differs

ISSN: 1474-760X