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Table 2 TE subfamilies that show differences in abundance between subgenomes

From: Impact of transposable elements on genome structure and evolution in bread wheat

CLARITE name TREP namea A/Bb A/Dc B/Dd Comment Genomee
DTC_famc14 DTC_Pavel 1.9 0.4 0.2 Enriched D
DTC_famc8 DTC_TAT4 0.8 0.3 0.4 Enriched D
RLC_famc1.7 RLC_Angela_A 3.9 1.0 0.2 Depleted B
RLC_famc1.8 RLC_Angela_B 0.2 0.6 2.9 Enriched B
RLC_famc3.2 RLC_Claudia 1.9 4.1 2.2 Enriched A
RLG_famc1.2 RLG_Fatima_E 0.8 3.8 4.7 Enriched A
RLG_famc1.4 RLG_Fatima_C 0.2 3.9 20.9 Enriched B
RLG_famc1.5 RLG_Fatima_B 2.5 76.6 30.1 Enriched A
RLG_famc10.2 RLG_Carmilla 1.5 9.6 6.6 Enriched B
RLG_famc10.3 RLG_Ifis 0.9 0.2 0.3 Enriched D
RLG_famc15 RLG_Jeli 1.0 3.3 3.4 Depleted D
RLG_famc3.1 RLG_Laura_B 1.0 4.8 5.0 Depleted D
RLG_famc3.4 RLG_Laura_A 1.0 5.3 5.3 Depleted D
RLG_famc7.2 RLG_Erika 4.9 2.0 0.4 Enriched A
RLG_famc7.3 RLG_Sumaya 2.9 4.1 1.4 Enriched A
RLG_famc7.4 RLG_Sumana 0.2 0.9 4.1 Enriched B
RLG_famc9.2 RLG_Daniela 0.6 7.1 11.0 Enriched B
RLX_famc4 Unnamed 0.5 0.2 0.5 Enriched D
  1. aName under which the family was previously described and/or stored in the TREP database
  2. bcdRatio of abundance between subgenomes
  3. eSubgenome in which abundance or distribution of the respective TE families differs