Table 1 Summary of genes with QAPA-inferred APA changes and significant differential steady-state mRNA expression changes measured by DESeq2 [40] (|log2 fold change| > 1.5 and FDR < 0.01)
From: QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data
| Â | Differential expression | |||
|---|---|---|---|---|
Increase | No change | Decrease | ||
APA | Lengthening | 88 | 436 | 44 |
No change | 329 | 2548 | 340 | |
Shortening | 6 | 24 | 10 | |