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Table 1 Summary of genes with QAPA-inferred APA changes and significant differential steady-state mRNA expression changes measured by DESeq2 [40] (|log2 fold change| > 1.5 and FDR < 0.01)

From: QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data

  Differential expression
Increase No change Decrease
APA Lengthening 88 436 44
No change 329 2548 340
Shortening 6 24 10