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Table 2 ChIP-seq and DNase-seq data summary

From: Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution

Cell line Treatment Technique Number of replicates Accession
NHEK No treatment CTCF, H3K4me3, H3K27me3, H3K36me3 ChIP-seq 2 ENCODE uniform peaks
NHEK No treatment EZH2, H3K4me1/me2, H3K9me1/me3/ac, H3K79me2, H4K20me1, H2A.Z, H3K27ac, POL2B ChIP-seq 1 ENCODE uniform peaks
NHEK No treatment DNase-seq 2 ENCODE uniform peaks
NHEK No treatment p63 ChIP-seq 1 GSE59827
U2OS No treatment DNase-seq, H3K27ac ChIP-seq 1 GSE87831
U2OS No treatment H3K4me1, POL2B ChIP-seq 1 GSE73742
U2OS No treatment H3K4me3, H3K27me3 ChIP-seq 1 GSE35573
U2OS No treatment H3K9me3, H3K36me3 ChIP-seq 1 ENCODE
U2OS No treatment CTCF ChIP-seq 1 ChIP-Atlas
U2OS 4-hydroxytamoxifen XRCC4, γ-H2A.X ChIP-seq 1 E-MTAB-1241
KBM7 No treatment DNase-seq 1 ChIP-Atlas
KBM7 No treatment H3K9me3 ChIP-seq 1 GSE60056
K562 No treatment CTCF, H3K4me1/me3 ChIP-seq 1 ENCODE
MCF-7 No treatment H3K4me1/me3, H3K9ac/me3, H3K27me3 ChIP-seq 1 GSE23701
MCF-7 No treatment DNase-seq and CTCF ChIP-seq 1 ENCODE