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Table 4 Tools for compositionality-aware ecological network inference

From: Experimental design and quantitative analysis of microbial community multiomics

Tool Infers directed interaction? Adjusts for covariates? Reference(s)
CCREPE/ReBoot No No [64]
SparCC No No [65]
CCLasso No No [66]
REBACCA No No [139]
SPIEC-EASI No No [67]
MENAP No No [140]
MInt No Yes [141]
MetaMIS Yes No [142]
BioMiCo/BiomeNet Yes No [143, 144]
MDSINE Yes No [87]
DBN Yes No [145]