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Table 1 Estimated parameters for Npas4 (k 1,k 0)-stimulus model

From: BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells

 

Parameter

Mean

Standard deviation

Units

\(k_{1}^{U}\)

Activation rate

0.0093

0.0010

min −1

\(k_{1}^{S}\)

Activation rate after stimulus

0.0839

0.0063

min −1

\(k_{0}^{U}\)

Deactivation rate

0.1108

0.0172

min −1

\(k_{0}^{S}\)

Deactivation rate after stimulus

0.0189

0.0056

min −1

μ 0

ρ 0 synthesis rate

0.0078

0.0042

mRNA min −1

μ 1

ρ 1 synthesis rate

8.14

0.2305

mRNA min −1

δ

mRNA degradation rate

0.0559

min −1