From: CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data
Data set | Size | CIDR | CIDR (L) | prcomp | t-SNE | RaceID | ZIFA |
---|---|---|---|---|---|---|---|
Pancreatic islet | 60 | 5.2 s | 5.3 s | 2.9 s | 8.5 s | 48.6 s | 40.1 min |
Simulation | 150 | 1.9 s | 2.3 s | 2.9 s | 14.2 s | 20.7 s | 32.1 min |
Human brain | 420 | 6.6 s | 8.9 s | 13.7 s | 1.4 min | 1.5 min | 1.1 h |
Mouse brain | 1800 | 57.9 s | 1.1 min | 3.2 min | 23.1 min | 2.5 ha | 1.8 h |