Table 2 Overlap of m5Cs with miRNA target sites in the 3′ UTR of ESC and brain RNA
From: Distinct 5-methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain
| Â | Total poly(A) RNA | Nuclear poly(A) RNA | ||
|---|---|---|---|---|
ESC | Brain | ESC | Brain | |
m5Cs in 3′ UTR | 1774 | 863 | 1687 | 1027 |
3′ UTRs with m5Cs | 700 | 287 | 686 | 282 |
m5Cs in miRNA targets | 310 | 63 | 274 | 84 |
miRNA targets with m5Cs | 241 | 43 | 233 | 62 |
miRNA targets in 3′ UTRs with m5Cs | 13,629 | 5693 | 12,050 | 5535 |
p value (random permutation test) | 0.100 | 10E-4 | 0.0634 | 10E-4 |
Z-score | –1.2454 | –5.5334 | –1.5002 | –5.6833 |
No. of iterations | 10,000 | 10,000 | 10,000 | 10,000 |