Fig. 6
From: GiniClust: detecting rare cell types from single-cell gene expression data with Gini index
GiniClust identifies a rare cell type in mouse cortex and hippocampus. a Relationship between the raw Gini index and the log2-transformed maximum expression level. Selected genes with high normalized Gini index values are labeled as red dots. b t-SNE visualization of the data. Cells are color-coded based on the GiniClust cluster membership. c Overlap between the selected high Gini genes and upregulated genes in Cluster 4. d Expression pattern of representative genes (Hba-a2, Hbb-b2, Hbb-bs) in Cluster 4 (n = 3, left panels) compared to Cluster 1 (n = 1842, right panels). Each bar represents a single cell. The expression levels of Hba-a2 shown here represent the sum of the levels of Hba-a2_loc1 and Hba-a2_loc2 in the original paper