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Table 1 Predicted SV types in CHM1 and NA12878 by SVelter

From: Resolving complex structural genomic rearrangements using a randomized approach

SV type CHM1 NA12878
Simple DEL 1003 (0.72) 1867 (0.95)
Simple DUP 897 (0.61) 790 (0.61)
 Tandem 834 (0.62) 755 (0.60)
 Dispersed 63 (0.56) 35 (0.71)
Simple INV 48 (0.75) 107 (0.76)
Simple TRA 24 (0.67) 30 (0.83)
INV + DUP 126 (0.59) 29 (0.86)
DEL + INV 8 (0.88) 26 (0.81)
DEL + DUP 8 (0.50) 12 (0.67)
DEL + DUP + INV 2 (1.00) 6 (0.83)
Other 112 (0.63) 204 (0.77)
  1. Numbers in parenthesis indicate percentage of calls with PacBio validation support. The remaining calls either were not able to be assayed with our approach or were invalidated