Fig. 4

Results of Arboretum-Hi-C on four Hi-C data sets for two human cell lines, hESC, mESC, hIMR90, and mCortex. a Shown are the eigenvectors of the Laplacian of each Hi-C-derived graph in each of the ten clusters (major columns). The red numbers above the heat maps denote the size of the clusters. b Spearman’s correlation heat maps of the ten clusters. The order of the rows is the same as in (a). The numbers correspond to the size of the clusters. c Same as (b), but restricted to the bins with the same cluster assignment in all cell lines. Cluster C8 did not have any regions that were common in all four data sets. hESC human embryonic stem cell, hIMR90 IMR90 human fibroblast, mCortex mouse cortex, mESC mouse embryonic stem cell