Table 2 Structure, transcription, and functional constraint values of MULE-derived putative genes across the 11-genome dataset
Species | Parental ≥1 | Parental ≥2 | Exon = 1 | Exon ≥2 | FPKM > 0 | Ka/Ks < 1* | Ka/Ks > 1* |
|---|---|---|---|---|---|---|---|
O. sativa ssp. japonica | 1186 | 264 | 1745 | 1500 | 628 | 89 | 3 |
O. sativa ssp. indica | 922 | 187 | 1412 | 1233 | N/A | 76 | 3 |
O. rufipogon | 1042 | 258 | 1523 | 1269 | 563 | 99 | 4 |
O. nivara | 1161 | 285 | 1448 | 1346 | 688 | 72 | 1 |
O. glaberrima | 687 | 130 | 1118 | 878 | 662 | 45 | 1 |
O. barthii | 743 | 115 | 1485 | 1138 | 465 | 38 | 2 |
O. glumipatula | 939 | 247 | 1278 | 1151 | 702 | 44 | 1 |
O. meridionalis | 916 | 262 | 1408 | 1060 | 754 | 84 | 2 |
O. punctata | 393 | 34 | 1106 | 717 | 202 | 28 | 3 |
O. brachyantha | 123 | 27 | 185 | 169 | 146 | 7 | 0 |
Leersia perrieri | 78 | 13 | 306 | 171 | 184 | 1 | 0 |