Fig. 5
From: Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
Comparisons between the estimated size factors. Those from the deconvolution method are compared to those from a DESeq, b TMM, and c library size normalization. This is shown for the brain (top) and inDrop data sets (bottom). Axes are on a log-scale, and the red line represents equality between the two sets of factors. All sets of factors were centered to a median of unity prior to comparison. For the brain data, cells classified by Zeisel et al. as oligodendrocytes or pyramidal CA1 cells are shown here in orange and blue, respectively. TMM trimmed mean of M values