Table 9 Performance metrics for the ARCTIC data with the most significant probes removed (top 5 %)
From: An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies
Method | KS statistic | GIF | \(\hat {K}\) |
|---|---|---|---|
Unadjusted | 0.0758 | 0.9142 | – |
Ref-based | 0.0508 | 0.9907 | – |
Ref-free | 0.0296 | 1.1499 | 32 |
SVA | 0.0362 | 1.0962 | 15 |
ISVA | 0.1208 | 1.6820 | 39 |
EWASher | 0.7291 | 1.0164 | – |
RUV with three components | 0.0906 | 1.2423 | – |