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Table 11 Comparison of some features of the methods for cell-type mixture adjustment

From: An evaluation of methods correcting for cell-type heterogeneity in DNA methylation studies

  1. aWhat kinds of phenotype are allowed?
  2. bDoes the method use methylation proportions (beta values)? Or logit transformed beta values?
  3. cDoes the method estimate the number of latent cell types K, or is K input into the algorithm?