Fig. 2
From: ChromNet: Learning the human chromatin network from all ENCODE ChIP-seq data
a The uniform processing pipeline includes aligning sequences using Bowtie2, and then binning them into 1000–base-pair regions. b We inferred the GroupGM from all 1451 ChIP-seq data sets and integrated the model learned into a web interface to facilitate broad use. c We evaluated the model learned against known physical protein interactions (BioGRID), mapped global patterns through network embedding, and validated a novel predicted MYC-HCFC1 interaction with the proximity ligation assay (PLA)