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Table 10 Excerpt of the report table automatically generated by EAGER

From: EAGER: efficient ancient genome reconstruction

Sample # merged % merged # reads after C&M # mapped reads Duplicates
name reads reads prior to mapping prior to DeDup removed with DeDup
3077 5,437,812 94.78 % 5,737,174 1,023,502 410,234
Jorgen625 12,956,100 80.5 % 16,093,580 2,659,178 94,005
Refshale16 32,041,091 73.61 % 43,528,407 12,782,665 3,872,555
SK2 51,364,343 99.27 % 51,741,310 48,211,553 47,353,377
SK8 7,683,942 72.5 % 10,597,941 1,227,067 185,913
  1. The report shows results for five leprosy samples processed with EAGER. The number of merged reads, the percentage of merged reads as well as the number of duplicates removed can be seen for the respective samples. Note that this has been narrowed down to fit the page layout. A full report features more statistical values describing a sample, depending on which methods have been chosen to be executed in the pipeline (see Additional file 1)