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Fig. 4 | Genome Biology

Fig. 4

From: Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS-seq) assay

Fig. 4

Comparison between the two most comprehensive datasets of 500-cell THS-seq/Tn5059 and 500-cell ATAC-seq/EzTn5. a Venn diagram depicting peak overlap between 500-cell THS-seq/Tn5059, 500-cell ATAC-seq/EzTn5, and ENCODE UW data. A peak is shared if 1 base pair or more overlaps with a peak in the dataset being compared to. b Venn diagram depicting peak overlap between 500-cell THS-seq/Tn5059, 500-cell ATAC-seq/EzTn5, and ENCODE Duke data. A peak is shared if 1 base pair or more overlaps with a peak in the dataset being compared to. c Representation of the number of peaks that are shared between all three datasets for UW data, peaks that are found by 500-cell THS-seq/Tn5059 data and ENCODE UW data and not 500-cell ATAC-seq/EzTn5 data, and peaks that are found by 500-cell ATAC-seq/EzTn5 data and ENCODE UW data and not 500-cell THS-seq/Tn5059 data. Also a representation of the number of peaks that are shared between all three datasets for Duke data, peak regions that are found by 500-cell THS-seq/Tn5059 data and ENCODE Duke data and not 500-cell ATAC-seq/EzTn5 data, and peaks that are found by 500-cell ATAC-seq/EzTn5 data and ENCODE Duke data and not 500-cell THS-seq/Tn5059 data. d Comparison of peak size distributions. e Peak distances from transcription start sites as determined by GREAT [28]

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