Fig. 3
From: Identification of low abundance microbiome in clinical samples using whole genome sequencing
H. pylori (a, b) and Lactococcus lactis (c, d) retain consistent number of reads after each filtering step and the genomic coverage is uniform, indicating positive identifications. Similarly to Fig. 2, panels (a) and (c) indicate log-transformed counts per million (CPM) reads mapped to the respective bacteria and panels (b) and (d) contain read pileup along the genome in 5-kb segments. Dashed lines indicate minimum CPM values used in this study for positive identification of bacteria. BWA Burrows-Wheeler Aligner