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Table 1 Summary of the parameters to generate simulated reads

From: Teaser: Individualized benchmarking and optimization of read mapping results for NGS data

Dataset Reference Platform Read length (bp) Library type Number of simulated reads Mutation rate (%) Seq. error rate (%) Subsampled (%) Source Teaser runtime (min)
H1 GRCh37 Illumina 100 Paired 313,716 0.1 0.6 1 DWGSIM 15.41
H2 GRCh37 Illumina 100 Single 313,716 0.1 0.6 1 DWGSIM 11.08
D1 BDGP6 Illumina 150 Single 239,544 0.2 0.6 25 Mason 5.06
M1 GRCm38 Illumina 150 Single 322,561 0.2 0.6 1 Mason 19.78
D2 BDGP6 Illumina 150 Single 239,544 5.0 0.6 25 Mason 5.45
M2 GRCm38 Illumina 150 Single 322,561 5.0 0.6 1 Mason 19.25
D3 BDGP6 Ion Torrent 200 Single 179,658 0.1 4.0 25 DWGSIM 4.18
M3 GRCm38 Ion Torrent 200 Single 241,921 0.1 4.0 1 DWGSIM 20.4
D4 BDGP6 Illumina 22 Single 1,633,257 0.2 0.6 25 Mason 9.76
M4 GRCm38 Illumina 22 Single 2,199,284 0.2 0.6 1 Mason 58.38
C1 C. perifretum Illumina 100 Paired 112,500 0.9 0.6 1 Mason 30.06
C2 37,500 1.0