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Table 1 SNP and indel variants detected between the B. taurus UMD3.1 reference genome and aurochs specimen CPC98

From: Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

Variant type CPC98 genotypea Transition or transversion Count Present in dbSNP 140b Confirmed in modern re-sequenced animalsc
SNP Heterozygous Transition 368,538 93.1 % 72.7 %
Transversion 166,652 91.5 % 70.0 %
Homozygous Transition 1,010,894 98.6 % 90.1 %
Transversion 463,177 98.3 % 88.8 %
Weighted mean 96.9 % 84.9 %
Indel Heterozygous - 14,309 80.6 % 59.2 %
Homozygous - 90,346 96.4 % 84.8 %
Weighted mean 94.2 % 81.3 %
  1. aThe CPC98 genotype is given as homozygous for positions where the CPC98 sequence is homozygous for a different allele to that in the reference genome, and heterozygous where CPC98 carries only one allele that differs from the reference
  2. bThe percentage of variants that are recorded in dbSNP version 140
  3. cThe percentage of variants that were observed in the panel of 81 sequenced modern animals