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Table 2 Positively selected genes by branch and branch-site model that were shared in both the cinereous vulture (Accipitridae) and turkey vulture (Cathartidae)

From: The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures

Gene name

Cinereous vulture

Turkey vulture

Branch models

Branch-site models

Branch models

Branch-site models

M0: one-ratio

M1: free-ratio

2ΔL

P value

M0: one-ratio

M1: free-ratio

2ΔL

P value

ZDBF2

0.64881

2.2872

  

0.72895

1.3267

  

MIIP

0.61631

2.1433

  

0.62069

1.7923

  

TSPO2

0.42486

1.704

  

0.45792

1.2814

  

AHSG

0.51914

1.5601

  

0.67974

1.8824

8.166016

4.27E-03

CRYZL1

0.14953

1.4475

    

7.21743

7.22E-03

C14orf159

0.31294

1.2295

    

7.897072

4.95E-03

PDCD6

0.04673

1.1766

    

17.16492

3.43E-05

C8orf33

0.59386

1.1212

  

0.70879

1.9528

  

CYBRD1

0.37151

1.0177

  

0.61098

1.7848

  
  1. M0 denotes dn/ds for all the species in the study; M1 denotes dn/ds for the lineage leading to the target species; Likelihood ratio tests (LRT) were used to detect positive selection
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Genome Biology

ISSN: 1474-760X

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