Table 1 Datasets in this study
From: Comparison of Hi-C results using in-solution versus in-nucleus ligation
Dataset name | Total di-tags | Mapped di-tags | Percentre-ligation | Unique di-tags | Percent cis | Percent trans | Percent hybrid |
|---|---|---|---|---|---|---|---|
Mouse-1 ISL | 255,402,369 | 173,621,670 | 2.17 | 123,691,456 | 34.7 | 65.3 | 0.02 |
Mouse-2 ISL | 131,079,448 | 83,009,025 | 3.85 | 32,939,021 | 72.1 | 27.9 | 0.05 |
Human-1 ISL | 31,550,241 | 19,444,276 | 5.61 | 11,128,672 | 41.3 | 58.7 | 0.08 |
Human-2 ISL | 27,518,246 | 17,060,401 | 7.79 | 6,994,931 | 74.5 | 25.5 | 0.03 |
Mouse-human-1 ISL | 40,398,555 | 22,667,233 | 3.16 | 17,137,291 | 38.2 | 61.8 | 11.9 |
Mouse-human-2 ISL | 2,928,112 | 1,405,001 | 3.84 | 488,340 | 72.9 | 27.1 | 2.9 |
Mouse-1 INL | 242,699,915 | 167,175,980 | 3.49 | 108,733,338 | 85.6 | 14.4 | 0.16 |
Mouse-2 INL | 134,813,901 | 85,804,344 | 6.80 | 37,259,526 | 88.0 | 12.0 | 0.02 |
Human-1 INL | 34,860,295 | 22,113,388 | 10.40 | 11,457,531 | 85.8 | 14.2 | 0.07 |
Human-2 INL | 33,500,802 | 20,280,022 | 14.03 | 7,777,001 | 90.0 | 10.0 | 0.03 |
Mouse-human-1 INL | 33,762,441 | 19,318,810 | 4.16 | 11,533,994 | 85.6 | 14.4 | 0.06 |
Mouse-human-2 INL | 2,920,332 | 1,423,890 | 7.53 | 573,366 | 88.5 | 11.5 | 0.07 |
Mouse RL | 36,268,145 | 25,581,886 | 9.25 | 4,920,447 | 7.1 | 92.9 | - |