Table 3 Comparison of computing time between HaploShare, BEAGLE, GERMLINE PLINK, and DASH
From: HaploShare: identification of extended haplotypes shared by cases and evaluation against controls
Input data | HaploShare | BEAGLE (IBD) | BEAGLE (fastIBD) | GERMLINE | DASH plus GERMLINE | PLINK |
|---|---|---|---|---|---|---|
(100 cases, 500 controls) | (100 cases) | (100 cases) | (100 cases) | (100 cases) | (100 cases) | |
Phased genotype | 21Â h | 115Â h | 4Â min | 2Â min | 5Â min | N/a |
Unphased genotype | 29Â h | 116Â h | 38Â min | N/a | N/a | 3Â min |