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Table 7 Genes under positive selection (using FDR < 0.05) on the branch to Bombus (5 taxa tree)

From: A depauperate immune repertoire precedes evolution of sociality in bees

OrthoDB group id a Gene b Classification Total sites c Likelihood ratio d p-value BH-corrected q-value e Positively selected sites f
EOG666T1W domeless JAK/STAT pathway 1435 9.552 0.00100 0.01951 24L, 102R, 224S, 526A, 770T, 799N, 838V, 942V, 952I, 954A, 959L, 960A, 992Q, 1055R, 1056W, 1312T, 1316D
EOG6VDNFR dorsal Relish 353 22.813 0.00000 0.00013 104Q, 177S, 309R, 316K, 317I, 318S, 332S, 333Y, 334N, 336S, 347N, 350R
EOG66Q57J LOC100642902 (B. terr) Serine protease inhibitor 1189 20.354 0.00000 0.00023 165S, 230D, 247P, 419T, 500S, 502D, 590Q, 617S
EOG6BG7B9 snmp1 Scavenger receptor 430 18.183 0.00001 0.00047 77G, 217G, 227K, 346L, 353K, 394N, 395K
EOG6VX0M3 ark Caspase 1128 7.406 0.00325 0.04167 156L, 668S, 992R, 1074N, 1079L
EOG6ZPC9T rm62-F Small RNA regulatory pathway members 545 11.406 0.00037 0.01032 120R, 136G, 169Q, 542N, 543K
EOG6RV16R-1 BGRP-1 GNBP 459 9.363 0.00111 0.01951 222R, 229E, 370P, 458W
EOG6X0K8Q myd88 Toll pathway 209 9.782 0.00088 0.01951 45E, 83F, 133P, 199D
EOG6Z8WBN catalase Catalase 181 7.431 0.00321 0.04167 53A, 83T, 89S
EOG6931ZS-1 TLR-7 Toll receptor 1299 12.107 0.00025 0.00886 230T, 1190K, 1191D
EOG6KKWHX argonaute-2 Small RNA regulatory pathway members 810 8.276 0.00201 0.03147 684A
  1. aGroup identifiers are from OrthoDB 6 (http://cegg.unige.ch/orthodb6).
  2. bNumber of codons remaining in the alignment after trimming with Gblocks.
  3. cComparison of Branch-site model A versus a constrained version with ω 2 = 1.
  4. eMultiple test correction by the method of Benjamini and Hochberg to control the false discovery rate (only groups where FDR < 0.05 are shown).
  5. fSites are classified as under positive selection if the Bayesian posterior probability > 0.75 (> 0.95 in bold). The reference sequence is from A. mellifera.